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Because Minghui Gao et al

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The ClueGO plugin in Cytoscape was used to demonstrate the internal interconnection of ontologies and pathways involved in common DEGs with medium network specificity and showing pathways with p -value 1.5 ( 2.5 Significant shared gene detection and functional interaction Since dense interaction existed in the present large-scale network, the CytoHubba plugin in Cytoscape was applied to detect significant shared genes based on topological algorithms consisting of BottleNeck, Cluster coefficient, EPC, MCC, and MNC ( was employed to decipher the information on co-localization, co-expression, and functional characterization among these genes ( 2.6 Transcriptional and post-transcriptional analysis Considering the underlying regulations between transcription factor (TF), miRNA, and genes, significant shared gene-related TFs and miRNAs analysis was implemented in the NetworkAnalyst online tool ( based on the RegNetwork repository ( 2.7 External validation of candidate hub crosslinks To enhance authority and stringency, the significant shared genes were validated in ED- and depression-related datasets